Warning: This document is for an old version of Pydra: A simple dataflow engine with scalable semantics. The main version is master.

pydra.engine.audit module

Module to keep track of provenance information.

class pydra.engine.audit.Audit(audit_flags, messengers, messenger_args, develop=None)

Bases: object

Handle provenance tracking and resource utilization.

audit_check(flag)

Determine whether auditing is enabled for a particular flag.

Parameters:

flag (:obj: bool) – The flag that is checked.

Returns:

Boolean AND for self.oudit_flags and flag

Return type:

bool

audit_message(message, flags=None)

Send auditing message.

Parameters:

• message (dict) – A message in Pydra is a JSON-LD message object.

• flags (bool, optional) – If True and self.audit_flag, the message is sent.

audit_task(task)

finalize_audit(result)

End auditing.

monitor()

Start resource monitoring.

start_audit(odir)

Start recording provenance.

Monitored information is not sent until directory is created, in case message directory is inside task output directory.

Parameters:

odir (os.pathlike) – Message output directory.